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The cp (copy) command copies a file, files, or directory to another location. The option -R allows you to copy directories recursively (in general, -R or -r in commands often has the meaning of recursive ). If the last argument to the cp command is a directory, the files mentioned will be copied into that directory. Note that by default, cp will clobber existing files, so in the second example that follows, if there is already a file called afile in the directory /home/bible, it will be overwritten without asking for any confirmation. Consider the following examples: cp afile afile.bak Copies the file afile to a new file afile.bak. cp afile /home/bible/ Copies the file afile from the current directory to the directory /home/bible/. cp * /tmp Copies all nonhidden files in the current directory to /tmp/. cp -a docs docs.bak Recursively copies the directory docs beneath the current directory to a new directory docs.bak, while preserving file attributes. The -a option implies the -R option, as a convenience.

Mutation is applied to each of the individuals at a certain probability, pm. The mutation operator used depends on the application, as is illustrated later in this chapter. Offspring generated through mutation compete with the parent individuals to survive to the next generation. After mutation, the new population is selected, in one of the following ways: All the individuals, i.e. parents and offspring, have the same chance to be selected. Any of the selection operators of Section 8.4, e.g. tournament selection, can be used to create the new population. An elitist mechanism is used to transfer a group of the best parents to the next generation. The remainder of the population is selected from the remainder of the parents and offspring. First cull the worst parents and offspring. Then select the new population from the remainder "good" individuals. This will ensure that weak individuals do not survive to the next generation. Of course, a combination of an elitist and culling strategy is also possible.

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The mv (move) command has the meaning both of move and of rename. In the first example that follows, the file afile will be renamed to the name bfile. In the second example, the file afile in the current directory will be moved to the directory /tmp/. mv afile bfile Renames the existing file afile with the new name bfile mv afile /tmp Moves the file afile in the current directory to the directory /tmp

/home (called /users on some systems) Each user has a separate login directory where files can be kept These are normally stored under /home by some convention decided by the system administrator /root On newer Unix-like systems, root has been given a home-directory which is no longer the root of the file system '/' The name root then loses its logic..

The rm (remove) command enables you to delete files and directories. Be warned: rm is a dangerous command. It doesn t really offer you a second chance. When files are deleted, they re pretty well deleted. You can use rm -i as in the last example that follows. That at least gives you a second chance to think about it, but as soon as you agree, once again, the file is gone.

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Note Some people like to create an alias that makes the rm command act like rm -i. We would advise against this: It will lull you into a false sense of security, and when you re working on a system where this change has not been made, you may regret it.

This section illustrates EP using two examples, i.e. evolving a finite-state machine and function optimization. Each of the examples discusses mutation operators and representation schemes specific to that application. 11.3.1 Finite-State Machines

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